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Species belonging to selected taxon:

Carica papaya



ABOUT THIS RECORD

ID: MNEST002869
species: Carica papaya
miRNA family: MIRf1215
source: miRNEST

Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCCGGTCATTTTGTTTATAGA

miRNA*
TGTGAACATCTTGACCAAGGGGA

mismatches: 4
bulges: 2

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pre-miRNA
GCATTCAAATCCCCGGTCATTTTGTTTATAGAACGCGGTTCTCTAGGACATCNNNAAAAAGCTTTCTTCTGCCTCAATGCAGAACAGATGTTTTATATGT
TTCTGACCCTTGTGAACATCTTGACCAAGGGGAAGAAGGTG


dot-bracket secondary structure
((.(((...((((((((((...(((((((((.....((((.....((((((......(((((..((((((((......)))))..))).)))))..))))
))..)))).)))))))))...)))))..))))).))).)).



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11908-akr: 3e-23

microPC no hits
UniProt sp|Q9LF38|EDL1_ARATH: 2e-17

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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